HL_6OG7_040

3D structure

PDB id

6OG7 (explore in PDB, NAKB, or RNA 3D Hub)

Description

70S termination complex with RF2 bound to the UGA codon. Non-rotated ribosome with RF2 bound (Structure II)

Experimental method

ELECTRON MICROSCOPY

Resolution

3.3 Å

Loop

Sequence

AGAGAAU

Length

7 nucleotides

Bulged bases (A, C, G, U)

1634A

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_6OG7_040 not in the Motif Atlas

Homologous match to HL_5J7L_174

Geometric discrepancy: 0.1237

The information below is about HL_5J7L_174

Detailed Annotation

GNRA with one bulged base

Broad Annotation

GNRA

Motif group

HL_85603.1

Basepair signature

cWW-tSH-F-F

Number of instances in this motif group

304

Unit IDs

6OG7|1|1|A|1630
6OG7|1|1|G|1631
6OG7|1|1|A|1632
6OG7|1|1|G|1633
6OG7|1|1|A|1634
6OG7|1|1|A|1635
6OG7|1|1|U|1636

Current chains

Chain 1

23S ribosomal RNA

Nearby chains