HL_6OGF_040

3D structure

PDB id

6OGF (explore in PDB, NAKB, or RNA 3D Hub)

Description

70S termination complex with RF2 bound to the UGA codon. Partially rotated ribosome with RF2 bound (Structure III).

Experimental method

ELECTRON MICROSCOPY

Resolution

3.9 Å

Loop

Sequence

AGAGAAU

Length

7 nucleotides

Bulged bases

6OGF|1|1|A|1634

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_6OGF_040 not in the Motif Atlas

Homologous match to HL_5J7L_174

Geometric discrepancy: 0.134

The information below is about HL_5J7L_174

Detailed Annotation

GNRA

Broad Annotation

No text annotation

Motif group

HL_37824.7

Basepair signature

cWW-F-F-F-F

Number of instances in this motif group

349

Unit IDs

6OGF|1|1|A|1630
6OGF|1|1|G|1631
6OGF|1|1|A|1632
6OGF|1|1|G|1633
6OGF|1|1|A|1634
6OGF|1|1|A|1635
6OGF|1|1|U|1636

Current chains

Chain 1

23S ribosomal RNA

Nearby chains