HL_6OGG_009

3D structure

PDB id

6OGG (explore in PDB, NAKB, or RNA 3D Hub)

Description

70S termination complex with RF2 bound to the UGA codon. Rotated ribosome with RF2 bound (Structure IV).

Experimental method

ELECTRON MICROSCOPY

Resolution

4.2 Å

Loop

Sequence

CUGGAAAG

Length

8 nucleotides

Bulged bases

6OGG|1|1|A|311

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_6OGG_009 not in the Motif Atlas

Homologous match to HL_7RQB_010

Geometric discrepancy: 0.2149

The information below is about HL_7RQB_010

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_41998.1

Basepair signature

cWW-tWH-F-F-F

Number of instances in this motif group

69

Unit IDs

6OGG|1|1|C|305
6OGG|1|1|U|306
6OGG|1|1|G|307
6OGG|1|1|G|308
6OGG|1|1|A|309
6OGG|1|1|A|310
6OGG|1|1|A|311
6OGG|1|1|G|312

Current chains

Chain 1

23S ribosomal RNA

Nearby chains

Chain u

50S ribosomal protein L24