HL_6OGG_014

3D structure

PDB id

6OGG (explore in PDB, NAKB, or RNA 3D Hub)

Description

70S termination complex with RF2 bound to the UGA codon. Rotated ribosome with RF2 bound (Structure IV).

Experimental method

ELECTRON MICROSCOPY

Resolution

4.2 Å

Loop

Sequence

CGGCGAG

Length

7 nucleotides

Bulged bases

6OGG|1|1|C|490

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_6OGG_014 not in the Motif Atlas

Homologous match to HL_5J7L_148

Geometric discrepancy: 0.216

The information below is about HL_5J7L_148

Detailed Annotation

GNRA

Broad Annotation

No text annotation

Motif group

HL_37824.7

Basepair signature

cWW-F-F-F-F

Number of instances in this motif group

349

Unit IDs

6OGG|1|1|C|487
6OGG|1|1|G|488
6OGG|1|1|G|489
6OGG|1|1|C|490
6OGG|1|1|G|491
6OGG|1|1|A|492
6OGG|1|1|G|493

Current chains

Chain 1

23S ribosomal RNA

Nearby chains

Chain s

50S ribosomal protein L22