HL_6OGG_028

3D structure

PDB id

6OGG (explore in PDB, NAKB, or RNA 3D Hub)

Description

70S termination complex with RF2 bound to the UGA codon. Rotated ribosome with RF2 bound (Structure IV).

Experimental method

ELECTRON MICROSCOPY

Resolution

4.2 Å

Loop

Sequence

CGUAAUAG

Length

8 nucleotides

Bulged bases

6OGG|1|1|U|1097

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_6OGG_028 not in the Motif Atlas

Geometric match to HL_8C3A_022

Geometric discrepancy: 0.3145

The information below is about HL_8C3A_022

Detailed Annotation

Externally structured

Broad Annotation

Externally structured

Motif group

HL_96426.1

Basepair signature

cWW-F

Number of instances in this motif group

4

Unit IDs

6OGG|1|1|C|1092
6OGG|1|1|G|1093
6OGG|1|1|U|1094
6OGG|1|1|A|1095
6OGG|1|1|A|1096
6OGG|1|1|U|1097
6OGG|1|1|A|1098
6OGG|1|1|G|1099

Current chains

Chain 1

23S ribosomal RNA

Nearby chains

Chain 8

Peptide chain release factor 2

Chain F

50S ribosomal protein L36

Chain f

50S ribosomal protein L6