HL_6OGG_030

3D structure

PDB id

6OGG (explore in PDB, NAKB, or RNA 3D Hub)

Description

70S termination complex with RF2 bound to the UGA codon. Rotated ribosome with RF2 bound (Structure IV).

Experimental method

ELECTRON MICROSCOPY

Resolution

4.2 Å

Loop

Sequence

UGUGAG

Length

6 nucleotides

Bulged bases

None detected

QA status

Unknown status

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_6OGG_030 not in the Motif Atlas

Homologous match to HL_5J7L_164

Geometric discrepancy: 0.1998

The information below is about HL_5J7L_164

Detailed Annotation

GNRA

Broad Annotation

No text annotation

Motif group

HL_37824.8

Basepair signature

cWW-F-F-F-F

Number of instances in this motif group

352

Unit IDs

6OGG|1|1|U|1222
6OGG|1|1|G|1223
6OGG|1|1|U|1224
6OGG|1|1|G|1225
6OGG|1|1|A|1226
6OGG|1|1|G|1227

Current chains

Chain 1

23S ribosomal RNA

Nearby chains

Chain l

50S ribosomal protein L15

Chain q

50S ribosomal protein L20

Chain r

50S ribosomal protein L21