HL_6OGG_054
3D structure
- PDB id
- 6OGG (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- 70S termination complex with RF2 bound to the UGA codon. Rotated ribosome with RF2 bound (Structure IV).
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 4.2 Å
Loop
- Sequence
- GGUCGGACAUC
- Length
- 11 nucleotides
- Bulged bases
- 6OGG|1|1|U|2305, 6OGG|1|1|C|2306, 6OGG|1|1|G|2308, 6OGG|1|1|A|2309, 6OGG|1|1|C|2310
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- HL_6OGG_054 not in the Motif Atlas
- Geometric match to HL_5TBW_044
- Geometric discrepancy: 0.3044
- The information below is about HL_5TBW_044
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- HL_81100.1
- Basepair signature
- cWW
- Number of instances in this motif group
- 4
Unit IDs
6OGG|1|1|G|2303
6OGG|1|1|G|2304
6OGG|1|1|U|2305
6OGG|1|1|C|2306
6OGG|1|1|G|2307
6OGG|1|1|G|2308
6OGG|1|1|A|2309
6OGG|1|1|C|2310
6OGG|1|1|A|2311
6OGG|1|1|U|2312
6OGG|1|1|C|2313
Current chains
- Chain 1
- 23S ribosomal RNA
Nearby chains
- Chain e
- 50S ribosomal protein L5
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