3D structure

PDB id
6OGG (explore in PDB, NAKB, or RNA 3D Hub)
Description
70S termination complex with RF2 bound to the UGA codon. Rotated ribosome with RF2 bound (Structure IV).
Experimental method
ELECTRON MICROSCOPY
Resolution
4.2 Å

Loop

Sequence
UGAAUGGAAG
Length
10 nucleotides
Bulged bases
6OGG|1|1|A|2406
QA status
Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.
R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
R3DMCS Rfam
HL_6OGG_058 not in the Motif Atlas
Homologous match to HL_7A0S_058
Geometric discrepancy: 0.3401
The information below is about HL_7A0S_058
Detailed Annotation
No text annotation
Broad Annotation
No text annotation
Motif group
HL_53454.2
Basepair signature
cWW-tSH-F-F-F-F-F
Number of instances in this motif group
6

Unit IDs

6OGG|1|1|U|2404
6OGG|1|1|G|2405
6OGG|1|1|A|2406
6OGG|1|1|A|2407
6OGG|1|1|U|2408
6OGG|1|1|G|2409
6OGG|1|1|G|2410
6OGG|1|1|A|2411
6OGG|1|1|A|2412
6OGG|1|1|G|2413

Current chains

Chain 1
23S ribosomal RNA

Nearby chains

Chain l
50S ribosomal protein L15

Coloring options:


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