HL_6OGG_066

3D structure

PDB id

6OGG (explore in PDB, NAKB, or RNA 3D Hub)

Description

70S termination complex with RF2 bound to the UGA codon. Rotated ribosome with RF2 bound (Structure IV).

Experimental method

ELECTRON MICROSCOPY

Resolution

4.2 Å

Loop

Sequence

CUUUAAG

Length

7 nucleotides

Bulged bases

6OGG|1|1|U|2797, 6OGG|1|1|U|2798, 6OGG|1|1|A|2800

QA status

Unknown status

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_6OGG_066 not in the Motif Atlas

Geometric match to HL_4V88_198

Geometric discrepancy: 0.1515

The information below is about HL_4V88_198

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_71121.1

Basepair signature

cWW-F

Number of instances in this motif group

24

Unit IDs

6OGG|1|1|C|2795
6OGG|1|1|U|2796
6OGG|1|1|U|2797
6OGG|1|1|U|2798
6OGG|1|1|A|2799
6OGG|1|1|A|2800
6OGG|1|1|G|2801

Current chains

Chain 1

23S ribosomal RNA

Nearby chains