HL_6OGI_019

3D structure

PDB id

6OGI (explore in PDB, NAKB, or RNA 3D Hub)

Description

70S termination complex with RF2 bound to the UAG codon. Rotated ribosome conformation (Structure V)

Experimental method

ELECTRON MICROSCOPY

Resolution

3.4 Å

Loop

Sequence

CUUAACUGG

Length

9 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_6OGI_019 not in the Motif Atlas

Geometric match to HL_5L4O_002

Geometric discrepancy: 0.2703

The information below is about HL_5L4O_002

Detailed Annotation

tRNA anticodon loop

Broad Annotation

tRNA anticodon loop

Motif group

HL_82182.2

Basepair signature

cWW-F-F-F-F-F-F

Number of instances in this motif group

19

Unit IDs

6OGI|1|1|C|640
6OGI|1|1|U|641
6OGI|1|1|U|642
6OGI|1|1|A|643
6OGI|1|1|A|644
6OGI|1|1|C|645
6OGI|1|1|U|646
6OGI|1|1|G|647
6OGI|1|1|G|648

Current chains

Chain 1

23S ribosomal RNA

Nearby chains

Chain C

50S ribosomal protein L33

Chain E

50S ribosomal protein L35