HL_6OGI_064

3D structure

PDB id

6OGI (explore in PDB, NAKB, or RNA 3D Hub)

Description

70S termination complex with RF2 bound to the UAG codon. Rotated ribosome conformation (Structure V)

Experimental method

ELECTRON MICROSCOPY

Resolution

3.4 Å

Loop

Sequence

CUGAAAGCAUCUAAG

Length

15 nucleotides

Bulged bases

6OGI|1|1|G|2751

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_6OGI_064 not in the Motif Atlas

Homologous match to HL_5J7L_199

Geometric discrepancy: 0.15

The information below is about HL_5J7L_199

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_74055.2

Basepair signature

cWW-tWH-cWH-tSH-tHW-tHW-tSW

Number of instances in this motif group

7

Unit IDs

6OGI|1|1|C|2745
6OGI|1|1|U|2746
6OGI|1|1|G|2747
6OGI|1|1|A|2748
6OGI|1|1|A|2749
6OGI|1|1|A|2750
6OGI|1|1|G|2751
6OGI|1|1|C|2752
6OGI|1|1|A|2753
6OGI|1|1|U|2754
6OGI|1|1|C|2755
6OGI|1|1|U|2756
6OGI|1|1|A|2757
6OGI|1|1|A|2758
6OGI|1|1|G|2759

Current chains

Chain 1

23S ribosomal RNA

Nearby chains

Chain F

50S ribosomal protein L36

Chain f

50S ribosomal protein L6

Chain j

50S ribosomal protein L13