HL_6OGI_075
3D structure
- PDB id
- 6OGI (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- 70S termination complex with RF2 bound to the UAG codon. Rotated ribosome conformation (Structure V)
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 3.4 Å
Loop
- Sequence
- GGGUAACGGCU
- Length
- 11 nucleotides
- Bulged bases
- None detected
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- HL_6OGI_075 not in the Motif Atlas
- Geometric match to HL_5WWT_001
- Geometric discrepancy: 0.2577
- The information below is about HL_5WWT_001
- Detailed Annotation
- tRNA D-loop
- Broad Annotation
- No text annotation
- Motif group
- HL_45175.1
- Basepair signature
- cWW-cWS-F-F
- Number of instances in this motif group
- 5
Unit IDs
6OGI|1|3|G|258
6OGI|1|3|G|259
6OGI|1|3|G|260
6OGI|1|3|U|261
6OGI|1|3|A|262
6OGI|1|3|A|263
6OGI|1|3|C|264
6OGI|1|3|G|265
6OGI|1|3|G|266
6OGI|1|3|C|267
6OGI|1|3|U|268
Current chains
- Chain 3
- 16S ribosomal RNA
Nearby chains
- Chain V
- 30S ribosomal protein S17
- Chain Y
- 30S ribosomal protein S20
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