HL_6OGI_121

3D structure

PDB id

6OGI (explore in PDB, NAKB, or RNA 3D Hub)

Description

70S termination complex with RF2 bound to the UAG codon. Rotated ribosome conformation (Structure V)

Experimental method

ELECTRON MICROSCOPY

Resolution

3.4 Å

Loop

Sequence

UGGGCGCAAGCCUGA

Length

15 nucleotides

Bulged bases

6OGI|1|3|G|388

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_6OGI_121 not in the Motif Atlas

Geometric match to HL_5TBW_226

Geometric discrepancy: 0.3611

The information below is about HL_5TBW_226

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_59342.2

Basepair signature

cWW-F-F-F-F-cWW-F-F

Number of instances in this motif group

5

Unit IDs

6OGI|1|3|U|375
6OGI|1|3|G|376
6OGI|1|3|G|377
6OGI|1|3|G|378
6OGI|1|3|C|379
6OGI|1|3|G|380
6OGI|1|3|C|381
6OGI|1|3|A|382
6OGI|1|3|A|383
6OGI|1|3|G|384
6OGI|1|3|C|385
6OGI|1|3|C|386
6OGI|1|3|U|387
6OGI|1|3|G|388
6OGI|1|3|A|389

Current chains

Chain 3

16S ribosomal RNA

Nearby chains

Chain U

30S ribosomal protein S16