HL_6OGI_124

3D structure

PDB id

6OGI (explore in PDB, NAKB, or RNA 3D Hub)

Description

70S termination complex with RF2 bound to the UAG codon. Rotated ribosome conformation (Structure V)

Experimental method

ELECTRON MICROSCOPY

Resolution

3.4 Å

Loop

Sequence

GGCUCAACC

Length

9 nucleotides

Bulged bases

6OGI|1|3|U|619

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_6OGI_124 not in the Motif Atlas

Geometric match to HL_3RG5_006

Geometric discrepancy: 0.3303

The information below is about HL_3RG5_006

Detailed Annotation

tRNA anticodon loop

Broad Annotation

tRNA anticodon loop

Motif group

HL_04259.3

Basepair signature

cWW-F-F-F-F-F-F

Number of instances in this motif group

7

Unit IDs

6OGI|1|3|G|616
6OGI|1|3|G|617
6OGI|1|3|C|618
6OGI|1|3|U|619
6OGI|1|3|C|620
6OGI|1|3|A|621
6OGI|1|3|A|622
6OGI|1|3|C|623
6OGI|1|3|C|624

Current chains

Chain 3

16S ribosomal RNA

Nearby chains

Chain I

30S ribosomal protein S4

Chain U

30S ribosomal protein S16