HL_6OGI_126
3D structure
- PDB id
- 6OGI (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- 70S termination complex with RF2 bound to the UAG codon. Rotated ribosome conformation (Structure V)
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 3.4 Å
Loop
- Sequence
- GCGAAGGC
- Length
- 8 nucleotides
- Bulged bases
- None detected
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- HL_6OGI_126 not in the Motif Atlas
- Geometric match to HL_2IL9_007
- Geometric discrepancy: 0.2686
- The information below is about HL_2IL9_007
- Detailed Annotation
- GNRA with near cWW
- Broad Annotation
- GNRA with near cWW
- Motif group
- HL_82182.1
- Basepair signature
- cWW-F-F-F-F-F-F
- Number of instances in this motif group
- 21
Unit IDs
6OGI|1|3|G|725
6OGI|1|3|C|726
6OGI|1|3|G|727
6OGI|1|3|A|728
6OGI|1|3|A|729
6OGI|1|3|G|730
6OGI|1|3|G|731
6OGI|1|3|C|732
Current chains
- Chain 3
- 16S ribosomal RNA
Nearby chains
- Chain T
- 30S ribosomal protein S15
- Chain W
- 30S ribosomal protein S18
- Chain Z
- 30S ribosomal protein S21
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