HL_6OIG_005
3D structure
- PDB id
- 6OIG (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Subunit joining exposes nascent pre-40S rRNA for processing and quality control
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 3.8 Å
Loop
- Sequence
- UUGGAACA
- Length
- 8 nucleotides
- Bulged bases
- 6OIG|1|5|C|200
- QA status
- Unknown status
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- HL_6OIG_005 not in the Motif Atlas
- Geometric match to HL_8VT5_003
- Geometric discrepancy: 0.3745
- The information below is about HL_8VT5_003
- Detailed Annotation
- T-loop with 2 stacked bulged bases
- Broad Annotation
- T-loop
- Motif group
- HL_01609.1
- Basepair signature
- cWW-tWH-F-F-F
- Number of instances in this motif group
- 18
Unit IDs
6OIG|1|5|U|194
6OIG|1|5|U|195
6OIG|1|5|G|196
6OIG|1|5|G|197
6OIG|1|5|A|198
6OIG|1|5|A|199
6OIG|1|5|C|200
6OIG|1|5|A|201
Current chains
- Chain 5
- 25S ribosomal RNA
Nearby chains
- Chain Y
- 60S ribosomal protein L26-A
- Chain e
- 60S ribosomal protein L32
Coloring options: