HL_6OIG_007
3D structure
- PDB id
- 6OIG (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Subunit joining exposes nascent pre-40S rRNA for processing and quality control
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 3.8 Å
Loop
- Sequence
- GUGAGAAUC
- Length
- 9 nucleotides
- Bulged bases
- 6OIG|1|5|G|218, 6OIG|1|5|A|219, 6OIG|1|5|G|220
- QA status
- Unknown status
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- HL_6OIG_007 not in the Motif Atlas
- Homologous match to HL_8C3A_007
- Geometric discrepancy: 0.2424
- The information below is about HL_8C3A_007
- Detailed Annotation
- T-loop with unstacked turn
- Broad Annotation
- T-loop
- Motif group
- HL_08002.12
- Basepair signature
- cWW-cWW-F-tWH
- Number of instances in this motif group
- 16
Unit IDs
6OIG|1|5|G|216
6OIG|1|5|U|217
6OIG|1|5|G|218
6OIG|1|5|A|219
6OIG|1|5|G|220
6OIG|1|5|A|221
6OIG|1|5|A|222
6OIG|1|5|U|223
6OIG|1|5|C|224
Current chains
- Chain 5
- 25S ribosomal RNA
Nearby chains
- Chain C
- 60S ribosomal protein L4-A
- Chain Y
- 60S ribosomal protein L26-A
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