HL_6OIG_021

3D structure

PDB id

6OIG (explore in PDB, NAKB, or RNA 3D Hub)

Description

Subunit joining exposes nascent pre-40S rRNA for processing and quality control

Experimental method

ELECTRON MICROSCOPY

Resolution

3.8 Å

Loop

Sequence

GCGAAAGAC

Length

9 nucleotides

Bulged bases

6OIG|1|5|A|913, 6OIG|1|5|G|916

QA status

Unknown status

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_6OIG_021 not in the Motif Atlas

Geometric match to HL_6CF2_001

Geometric discrepancy: 0.3577

The information below is about HL_6CF2_001

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_87553.1

Basepair signature

cWW-F-F-F-F-F

Number of instances in this motif group

7

Unit IDs

6OIG|1|5|G|910
6OIG|1|5|C|911
6OIG|1|5|G|912
6OIG|1|5|A|913
6OIG|1|5|A|914
6OIG|1|5|A|915
6OIG|1|5|G|916
6OIG|1|5|A|917
6OIG|1|5|C|918

Current chains

Chain 5

25S ribosomal RNA

Nearby chains

Chain A

60S ribosomal protein L2-A

Chain j

60S ribosomal protein L37-A