HL_6OIG_027
3D structure
- PDB id
- 6OIG (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Subunit joining exposes nascent pre-40S rRNA for processing and quality control
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 3.8 Å
Loop
- Sequence
- CAUGGAAGUCG
- Length
- 11 nucleotides
- Bulged bases
- 6OIG|1|5|A|1245
- QA status
- Unknown status
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- HL_6OIG_027 not in the Motif Atlas
- Homologous match to HL_8C3A_027
- Geometric discrepancy: 0.5508
- The information below is about HL_8C3A_027
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- HL_19210.1
- Basepair signature
- cWW-F-F-F-F-F-F-F-F
- Number of instances in this motif group
- 6
Unit IDs
6OIG|1|5|C|1239
6OIG|1|5|A|1240
6OIG|1|5|U|1241
6OIG|1|5|G|1242
6OIG|1|5|G|1243
6OIG|1|5|A|1244
6OIG|1|5|A|1245
6OIG|1|5|G|1246
6OIG|1|5|U|1247
6OIG|1|5|C|1248
6OIG|1|5|G|1249
Current chains
- Chain 5
- 25S ribosomal RNA
Nearby chains
- Chain q
- 60S acidic ribosomal protein P0,60S acidic ribosomal protein P0,AO, L1OE
- Chain s
- 60S ribosomal protein L12-A
Coloring options: