HL_6OIG_067

3D structure

PDB id

6OIG (explore in PDB, NAKB, or RNA 3D Hub)

Description

Subunit joining exposes nascent pre-40S rRNA for processing and quality control

Experimental method

ELECTRON MICROSCOPY

Resolution

3.8 Å

Loop

Sequence

UGAUCA

Length

6 nucleotides

Bulged bases

None detected

QA status

Unknown status

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_6OIG_067 not in the Motif Atlas

Homologous match to HL_8C3A_067

Geometric discrepancy: 0.2253

The information below is about HL_8C3A_067

Detailed Annotation

Ribsomal LSU H95

Broad Annotation

Ribsomal LSU H95

Motif group

HL_65794.1

Basepair signature

cWW-F-F-F-F

Number of instances in this motif group

11

Unit IDs

6OIG|1|5|U|3068
6OIG|1|5|G|3069
6OIG|1|5|A|3070
6OIG|1|5|U|3071
6OIG|1|5|C|3072
6OIG|1|5|A|3073

Current chains

Chain 5

25S ribosomal RNA

Nearby chains

Chain R

60S ribosomal protein L19-A

Chain U

60S ribosomal protein L22-A

Chain d

60S ribosomal protein L31-A