HL_6OIG_070

3D structure

PDB id

6OIG (explore in PDB, NAKB, or RNA 3D Hub)

Description

Subunit joining exposes nascent pre-40S rRNA for processing and quality control

Experimental method

ELECTRON MICROSCOPY

Resolution

3.8 Å

Loop

Sequence

CGGAAAGG

Length

8 nucleotides

Bulged bases

None detected

QA status

Unknown status

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_6OIG_070 not in the Motif Atlas

Homologous match to HL_8C3A_070

Geometric discrepancy: 0.2591

The information below is about HL_8C3A_070

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_24596.2

Basepair signature

cWW-F-F-F

Number of instances in this motif group

7

Unit IDs

6OIG|1|5|C|3240
6OIG|1|5|G|3241
6OIG|1|5|G|3242
6OIG|1|5|A|3243
6OIG|1|5|A|3244
6OIG|1|5|A|3245
6OIG|1|5|G|3246
6OIG|1|5|G|3247

Current chains

Chain 5

25S ribosomal RNA

Nearby chains

Chain B

60S ribosomal protein L3

Chain O

60S ribosomal protein L16-A