HL_6OIG_083
3D structure
- PDB id
- 6OIG (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Subunit joining exposes nascent pre-40S rRNA for processing and quality control
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 3.8 Å
Loop
- Sequence
- AAGCAGAAUU
- Length
- 10 nucleotides
- Bulged bases
- 6OIG|1|5|G|2898
- QA status
- Unknown status
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- HL_6OIG_083 not in the Motif Atlas
- Homologous match to HL_9AXU_058
- Geometric discrepancy: 0.4594
- The information below is about HL_9AXU_058
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- HL_34245.2
- Basepair signature
- cWW-cWW-F-F-F-F-F
- Number of instances in this motif group
- 4
Unit IDs
6OIG|1|5|A|2896
6OIG|1|5|A|2897
6OIG|1|5|G|2898
6OIG|1|5|C|2899
6OIG|1|5|A|2900
6OIG|1|5|G|2901
6OIG|1|5|A|2902
6OIG|1|5|A|2903
6OIG|1|5|U|2904
6OIG|1|5|U|2905
Current chains
- Chain 5
- 25S ribosomal RNA
Nearby chains
- Chain H
- 60S ribosomal protein L9-A
- Chain m
- Ubiquitin-60S ribosomal protein L40
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