3D structure

PDB id
6OJ2 (explore in PDB, NAKB, or RNA 3D Hub)
Description
Crystal structure of tRNA^ Ala(GGC) bound to the near-cognate 70S A-site
Experimental method
X-RAY DIFFRACTION
Resolution
3.2 Å

Loop

Sequence
GGUAAUGGC
Length
9 nucleotides
Bulged bases
6OJ2|1|QA|G|266
QA status
Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.
R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
R3DMCS Rfam
HL_6OJ2_006 not in the Motif Atlas
Homologous match to HL_4LFB_006
Geometric discrepancy: 0.1004
The information below is about HL_4LFB_006
Detailed Annotation
GNRA related
Broad Annotation
GNRA related
Motif group
HL_84299.4
Basepair signature
cWW-F-F-F-F-F-F
Number of instances in this motif group
9

Unit IDs

6OJ2|1|QA|G|259
6OJ2|1|QA|G|260
6OJ2|1|QA|U|261
6OJ2|1|QA|A|262
6OJ2|1|QA|A|263
6OJ2|1|QA|U|264
6OJ2|1|QA|G|265
6OJ2|1|QA|G|266
6OJ2|1|QA|C|267

Current chains

Chain QA
16S rRNA

Nearby chains

Chain QQ
30S ribosomal protein S17
Chain QT
30S ribosomal protein S20

Coloring options:


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