HL_6OKK_006

3D structure

PDB id

6OKK (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM structure of the Plasmodium falciparum 80S ribosome bound to the anti-protozoan drug emetine, small subunit

Experimental method

ELECTRON MICROSCOPY

Resolution

3.3 Å

Loop

Sequence

GGUAUUGGC

Length

9 nucleotides

Bulged bases

6OKK|1|A|G|343

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_6OKK_006 not in the Motif Atlas

Homologous match to HL_4V88_193

Geometric discrepancy: 0.1588

The information below is about HL_4V88_193

Detailed Annotation

GNRA related

Broad Annotation

GNRA related

Motif group

HL_82182.2

Basepair signature

cWW-F-F-F-F-F-F

Number of instances in this motif group

19

Unit IDs

6OKK|1|A|G|336
6OKK|1|A|G|337
6OKK|1|A|U|338
6OKK|1|A|A|339
6OKK|1|A|U|340
6OKK|1|A|U|341
6OKK|1|A|G|342
6OKK|1|A|G|343
6OKK|1|A|C|344

Current chains

Chain A

18S ribosomal RNA

Nearby chains

Chain L

40S ribosomal protein S8

Chain V

40S ribosomal protein S11