HL_6OLE_001
3D structure
- PDB id
- 6OLE (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Human ribosome nascent chain complex (CDH1-RNC) stalled by a drug-like molecule with AP and PE tRNAs
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 3.1 Å
Loop
- Sequence
- CAGCUAGCUG
- Length
- 10 nucleotides
- Bulged bases
- None detected
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- HL_6OLE_001 not in the Motif Atlas
- Geometric match to HL_4V9F_001
- Geometric discrepancy: 0.1633
- The information below is about HL_4V9F_001
- Detailed Annotation
- Pseudoknot with intercalation
- Broad Annotation
- No text annotation
- Motif group
- HL_17803.1
- Basepair signature
- cWW-F-F-F-F-F-F-F-F
- Number of instances in this motif group
- 9
Unit IDs
6OLE|1|D|C|47
6OLE|1|D|A|48
6OLE|1|D|G|49
6OLE|1|D|C|50
6OLE|1|D|U|51
6OLE|1|D|A|52
6OLE|1|D|G|53
6OLE|1|D|C|54
6OLE|1|D|U|55
6OLE|1|D|G|56
Current chains
- Chain D
- 5.8S ribosomal RNA
Nearby chains
- Chain Y
- 60S ribosomal protein L23a
- Chain i
- 60S ribosomal protein L35
- Chain k
- 60S ribosomal protein L37
- Chain m
- 60S ribosomal protein L39
- Chain t
- Large subunit ribosomal RNA; LSU rRNA
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