HL_6OLE_002
3D structure
- PDB id
- 6OLE (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Human ribosome nascent chain complex (CDH1-RNC) stalled by a drug-like molecule with AP and PE tRNAs
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 3.1 Å
Loop
- Sequence
- GUGAAUUGCAGGACACAUUGAUC
- Length
- 23 nucleotides
- Bulged bases
- 6OLE|1|D|A|84, 6OLE|1|D|U|85, 6OLE|1|D|U|86
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- HL_6OLE_002 not in the Motif Atlas
- Homologous match to HL_8C3A_075
- Geometric discrepancy: 0.4682
- The information below is about HL_8C3A_075
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- HL_07882.1
- Basepair signature
- cWW-F-F-tSH-tHS-F-F-F-F-F-F-F-F-F-F
- Number of instances in this motif group
- 2
Unit IDs
6OLE|1|D|G|68
6OLE|1|D|U|69
6OLE|1|D|G|70
6OLE|1|D|A|71
6OLE|1|D|A|72
6OLE|1|D|U|73
6OLE|1|D|U|74
6OLE|1|D|G|75
6OLE|1|D|C|76
6OLE|1|D|A|77
6OLE|1|D|G|78
6OLE|1|D|G|79
6OLE|1|D|A|80
6OLE|1|D|C|81
6OLE|1|D|A|82
6OLE|1|D|C|83
6OLE|1|D|A|84
6OLE|1|D|U|85
6OLE|1|D|U|86
6OLE|1|D|G|87
6OLE|1|D|A|88
6OLE|1|D|U|89
6OLE|1|D|C|90
Current chains
- Chain D
- 5.8S ribosomal RNA
Nearby chains
- Chain Z
- 60S ribosomal protein L26
- Chain i
- 60S ribosomal protein L35
- Chain k
- 60S ribosomal protein L37
- Chain m
- 60S ribosomal protein L39
- Chain t
- Large subunit ribosomal RNA; LSU rRNA
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