HL_6OLE_004

3D structure

PDB id

6OLE (explore in PDB, NAKB, or RNA 3D Hub)

Description

Human ribosome nascent chain complex (CDH1-RNC) stalled by a drug-like molecule with AP and PE tRNAs

Experimental method

ELECTRON MICROSCOPY

Resolution

3.1 Å

Loop

Sequence

GGGUUCCUCCC

Length

11 nucleotides

Bulged bases

6OLE|1|D|U|124, 6OLE|1|D|C|128

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_6OLE_004 not in the Motif Atlas

Geometric match to HL_8C3A_054

Geometric discrepancy: 0.1658

The information below is about HL_8C3A_054

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_71121.1

Basepair signature

cWW-F

Number of instances in this motif group

24

Unit IDs

6OLE|1|D|G|120
6OLE|1|D|G|121
6OLE|1|D|G|122
6OLE|1|D|U|123
6OLE|1|D|U|124
6OLE|1|D|C|125
6OLE|1|D|C|126
6OLE|1|D|U|127
6OLE|1|D|C|128
6OLE|1|D|C|129
6OLE|1|D|C|130

Current chains

Chain D

5.8S ribosomal RNA

Nearby chains

Chain Y

60S ribosomal protein L23a

Chain t

Large subunit ribosomal RNA; LSU rRNA