HL_6OLE_009

3D structure

PDB id

6OLE (explore in PDB, NAKB, or RNA 3D Hub)

Description

Human ribosome nascent chain complex (CDH1-RNC) stalled by a drug-like molecule with AP and PE tRNAs

Experimental method

ELECTRON MICROSCOPY

Resolution

3.1 Å

Loop

Sequence

GUA(A2M)UUC

Length

7 nucleotides

Bulged bases

6OLE|1|S2|A|158, 6OLE|1|S2|U|160, 6OLE|1|S2|U|161

QA status

Modified nucleotides: A2M

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_6OLE_009 not in the Motif Atlas

Homologous match to HL_4V88_188

Geometric discrepancy: 0.1694

The information below is about HL_4V88_188

Detailed Annotation

GNRA related

Broad Annotation

GNRA related

Motif group

HL_37824.2

Basepair signature

cWW-F-F-F-F

Number of instances in this motif group

360

Unit IDs

6OLE|1|S2|G|156
6OLE|1|S2|U|157
6OLE|1|S2|A|158
6OLE|1|S2|A2M|159
6OLE|1|S2|U|160
6OLE|1|S2|U|161
6OLE|1|S2|C|162

Current chains

Chain S2

18S ribosomal RNA

Nearby chains

Chain SG

40S ribosomal protein S6

Chain SY

40S ribosomal protein S24