HL_6OLE_018

3D structure

PDB id

6OLE (explore in PDB, NAKB, or RNA 3D Hub)

Description

Human ribosome nascent chain complex (CDH1-RNC) stalled by a drug-like molecule with AP and PE tRNAs

Experimental method

ELECTRON MICROSCOPY

Resolution

3.1 Å

Loop

Sequence

UCUUUCG

Length

7 nucleotides

Bulged bases

6OLE|1|S2|U|540

QA status

Unknown status

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_6OLE_018 not in the Motif Atlas

Geometric match to HL_5TBW_006

Geometric discrepancy: 0.3656

The information below is about HL_5TBW_006

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_71121.1

Basepair signature

cWW-F

Number of instances in this motif group

24

Unit IDs

6OLE|1|S2|U|538
6OLE|1|S2|C|539
6OLE|1|S2|U|540
6OLE|1|S2|U|541
6OLE|1|S2|U|542
6OLE|1|S2|C|543
6OLE|1|S2|G|544

Current chains

Chain S2

18S ribosomal RNA

Nearby chains