HL_6OLE_066

3D structure

PDB id

6OLE (explore in PDB, NAKB, or RNA 3D Hub)

Description

Human ribosome nascent chain complex (CDH1-RNC) stalled by a drug-like molecule with AP and PE tRNAs

Experimental method

ELECTRON MICROSCOPY

Resolution

3.1 Å

Loop

Sequence

CCUCAG

Length

6 nucleotides

Bulged bases

6OLE|1|t|C|1658, 6OLE|1|t|A|1661

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_6OLE_066 not in the Motif Atlas

Homologous match to HL_8C3A_022

Geometric discrepancy: 0.2576

The information below is about HL_8C3A_022

Detailed Annotation

Externally structured

Broad Annotation

Externally structured

Motif group

HL_96426.1

Basepair signature

cWW-F

Number of instances in this motif group

4

Unit IDs

6OLE|1|t|C|1657
6OLE|1|t|C|1658
6OLE|1|t|U|1659
6OLE|1|t|C|1660
6OLE|1|t|A|1661
6OLE|1|t|G|1662

Current chains

Chain t

28S ribosomal RNA

Nearby chains

Chain b

60S ribosomal protein L27a

Chain c

60S ribosomal protein L29

Chain p

60S ribosomal protein L36a