HL_6OLE_096

3D structure

PDB id

6OLE (explore in PDB, NAKB, or RNA 3D Hub)

Description

Human ribosome nascent chain complex (CDH1-RNC) stalled by a drug-like molecule with AP and PE tRNAs

Experimental method

ELECTRON MICROSCOPY

Resolution

3.1 Å

Loop

Sequence

GGGAACGGGC

Length

10 nucleotides

Bulged bases

6OLE|1|t|A|3847, 6OLE|1|t|A|3848, 6OLE|1|t|C|3849

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_6OLE_096 not in the Motif Atlas

Homologous match to HL_5TBW_051

Geometric discrepancy: 0.085

The information below is about HL_5TBW_051

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_90642.8

Basepair signature

cWW-tWH-F-F-F

Number of instances in this motif group

7

Unit IDs

6OLE|1|t|G|3844
6OLE|1|t|G|3845
6OLE|1|t|G|3846
6OLE|1|t|A|3847
6OLE|1|t|A|3848
6OLE|1|t|C|3849
6OLE|1|t|G|3850
6OLE|1|t|G|3851
6OLE|1|t|G|3852
6OLE|1|t|C|3853

Current chains

Chain t

28S ribosomal RNA

Nearby chains

Chain B

60S ribosomal protein L3

Chain f

60S ribosomal protein L32