HL_6OLF_040

3D structure

PDB id

6OLF (explore in PDB, NAKB, or RNA 3D Hub)

Description

Human ribosome nascent chain complex (CDH1-RNC) stalled by a drug-like molecule with AA and PE tRNAs

Experimental method

ELECTRON MICROSCOPY

Resolution

3.9 Å

Loop

Sequence

GCCCGGAGCGC

Length

11 nucleotides

Bulged bases

6OLF|1|S2|A|1781, 6OLF|1|S2|G|1784

QA status

Unknown status

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_6OLF_040 not in the Motif Atlas

Geometric match to HL_5TBW_006

Geometric discrepancy: 0.2352

The information below is about HL_5TBW_006

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_71121.1

Basepair signature

cWW-F

Number of instances in this motif group

24

Unit IDs

6OLF|1|S2|G|1749
6OLF|1|S2|C|1750
6OLF|1|S2|C|1751
6OLF|1|S2|C|1752
6OLF|1|S2|G|1779
6OLF|1|S2|G|1780
6OLF|1|S2|A|1781
6OLF|1|S2|G|1782
6OLF|1|S2|C|1783
6OLF|1|S2|G|1784
6OLF|1|S2|C|1785

Current chains

Chain S2

18S ribosomal RNA

Nearby chains

Chain X

60S ribosomal protein L24