HL_6OLF_062

3D structure

PDB id

6OLF (explore in PDB, NAKB, or RNA 3D Hub)

Description

Human ribosome nascent chain complex (CDH1-RNC) stalled by a drug-like molecule with AA and PE tRNAs

Experimental method

ELECTRON MICROSCOPY

Resolution

3.9 Å

Loop

Sequence

CGCGCUCG

Length

8 nucleotides

Bulged bases

6OLF|1|t|G|1391, 6OLF|1|t|U|1393

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_6OLF_062 not in the Motif Atlas

Geometric match to HL_5J7L_014

Geometric discrepancy: 0.3914

The information below is about HL_5J7L_014

Detailed Annotation

GNRA-like with tWH

Broad Annotation

GNRA

Motif group

HL_10453.3

Basepair signature

cWW-F-F-F-F-F

Number of instances in this motif group

9

Unit IDs

6OLF|1|t|C|1388
6OLF|1|t|G|1389
6OLF|1|t|C|1390
6OLF|1|t|G|1391
6OLF|1|t|C|1392
6OLF|1|t|U|1393
6OLF|1|t|C|1394
6OLF|1|t|G|1395

Current chains

Chain t

28S ribosomal RNA

Nearby chains

Chain c

60S ribosomal protein L29