HL_6OLF_064

3D structure

PDB id

6OLF (explore in PDB, NAKB, or RNA 3D Hub)

Description

Human ribosome nascent chain complex (CDH1-RNC) stalled by a drug-like molecule with AA and PE tRNAs

Experimental method

ELECTRON MICROSCOPY

Resolution

3.9 Å

Loop

Sequence

GCCGCGCC

Length

8 nucleotides

Bulged bases

6OLF|1|t|C|1467

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_6OLF_064 not in the Motif Atlas

Homologous match to HL_8C3A_018

Geometric discrepancy: 0.5589

The information below is about HL_8C3A_018

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_84570.1

Basepair signature

cWW-cWW-F

Number of instances in this motif group

6

Unit IDs

6OLF|1|t|G|1461
6OLF|1|t|C|1462
6OLF|1|t|C|1463
6OLF|1|t|G|1464
6OLF|1|t|C|1465
6OLF|1|t|G|1466
6OLF|1|t|C|1467
6OLF|1|t|C|1468

Current chains

Chain t

28S ribosomal RNA

Nearby chains

Chain M

60S ribosomal protein L13

Chain j

60S ribosomal protein L36