HL_6OLF_098

3D structure

PDB id

6OLF (explore in PDB, NAKB, or RNA 3D Hub)

Description

Human ribosome nascent chain complex (CDH1-RNC) stalled by a drug-like molecule with AA and PE tRNAs

Experimental method

ELECTRON MICROSCOPY

Resolution

3.9 Å

Loop

Sequence

GGGAACGGGC

Length

10 nucleotides

Bulged bases

6OLF|1|t|A|3847, 6OLF|1|t|A|3848, 6OLF|1|t|C|3849

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_6OLF_098 not in the Motif Atlas

Homologous match to HL_5TBW_051

Geometric discrepancy: 0.2007

The information below is about HL_5TBW_051

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_90642.8

Basepair signature

cWW-tWH-F-F-F

Number of instances in this motif group

7

Unit IDs

6OLF|1|t|G|3844
6OLF|1|t|G|3845
6OLF|1|t|G|3846
6OLF|1|t|A|3847
6OLF|1|t|A|3848
6OLF|1|t|C|3849
6OLF|1|t|G|3850
6OLF|1|t|G|3851
6OLF|1|t|G|3852
6OLF|1|t|C|3853

Current chains

Chain t

28S ribosomal RNA

Nearby chains

Chain B

60S ribosomal protein L3

Chain f

60S ribosomal protein L32