HL_6OLF_100

3D structure

PDB id

6OLF (explore in PDB, NAKB, or RNA 3D Hub)

Description

Human ribosome nascent chain complex (CDH1-RNC) stalled by a drug-like molecule with AA and PE tRNAs

Experimental method

ELECTRON MICROSCOPY

Resolution

3.9 Å

Loop

Sequence

GCCCGGCC

Length

8 nucleotides

Bulged bases

6OLF|1|t|C|4107, 6OLF|1|t|G|4108

QA status

Unknown status

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_6OLF_100 not in the Motif Atlas

Geometric match to HL_5TBW_018

Geometric discrepancy: 0.3516

The information below is about HL_5TBW_018

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_84570.1

Basepair signature

cWW-cWW-F

Number of instances in this motif group

6

Unit IDs

6OLF|1|t|G|4104
6OLF|1|t|C|4105
6OLF|1|t|C|4106
6OLF|1|t|C|4107
6OLF|1|t|G|4108
6OLF|1|t|G|4109
6OLF|1|t|C|4110
6OLF|1|t|C|4111

Current chains

Chain t

28S ribosomal RNA

Nearby chains

Chain a

60S ribosomal protein L27