HL_6OLF_118

3D structure

PDB id

6OLF (explore in PDB, NAKB, or RNA 3D Hub)

Description

Human ribosome nascent chain complex (CDH1-RNC) stalled by a drug-like molecule with AA and PE tRNAs

Experimental method

ELECTRON MICROSCOPY

Resolution

3.9 Å

Loop

Sequence

CUCCCUCG

Length

8 nucleotides

Bulged bases

6OLF|1|t|U|4984, 6OLF|1|t|C|4985

QA status

Unknown status

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_6OLF_118 not in the Motif Atlas

Geometric match to HL_6VMY_004

Geometric discrepancy: 0.3465

The information below is about HL_6VMY_004

Detailed Annotation

UNCG variation

Broad Annotation

UNCG variation

Motif group

HL_53890.2

Basepair signature

cWW-F-F-F

Number of instances in this motif group

15

Unit IDs

6OLF|1|t|C|4979
6OLF|1|t|U|4980
6OLF|1|t|C|4981
6OLF|1|t|C|4982
6OLF|1|t|C|4983
6OLF|1|t|U|4984
6OLF|1|t|C|4985
6OLF|1|t|G|4986

Current chains

Chain t

28S ribosomal RNA

Nearby chains

Chain SI

40S ribosomal protein S8