HL_6OLG_024

3D structure

PDB id

6OLG (explore in PDB, NAKB, or RNA 3D Hub)

Description

Human ribosome nascent chain complex stalled by a drug-like small molecule (CDH1_RNC with PP tRNA)

Experimental method

ELECTRON MICROSCOPY

Resolution

3.4 Å

Loop

Sequence

GCGAAAGAC

Length

9 nucleotides

Bulged bases

6OLG|1|A2|A|1612, 6OLG|1|A2|G|1615

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_6OLG_024 not in the Motif Atlas

Homologous match to HL_8C3A_021

Geometric discrepancy: 0.1455

The information below is about HL_8C3A_021

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_56443.1

Basepair signature

cWW-F-F-F-F-F

Number of instances in this motif group

7

Unit IDs

6OLG|1|A2|G|1609
6OLG|1|A2|C|1610
6OLG|1|A2|G|1611
6OLG|1|A2|A|1612
6OLG|1|A2|A|1613
6OLG|1|A2|A|1614
6OLG|1|A2|G|1615
6OLG|1|A2|A|1616
6OLG|1|A2|C|1617

Current chains

Chain A2

28S ribosomal RNA

Nearby chains

Chain AA

60S ribosomal protein L8

Chain AN

60S ribosomal protein L15

Chain Aj

60S ribosomal protein L37