HL_6OLG_027

3D structure

PDB id

6OLG (explore in PDB, NAKB, or RNA 3D Hub)

Description

Human ribosome nascent chain complex stalled by a drug-like small molecule (CDH1_RNC with PP tRNA)

Experimental method

ELECTRON MICROSCOPY

Resolution

3.4 Å

Loop

Sequence

CUGGCGUG

Length

8 nucleotides

Bulged bases

6OLG|1|A2|G|1803

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_6OLG_027 not in the Motif Atlas

Homologous match to HL_5TBW_024

Geometric discrepancy: 0.4549

The information below is about HL_5TBW_024

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_77436.2

Basepair signature

cWW-F-F-F-F-F

Number of instances in this motif group

23

Unit IDs

6OLG|1|A2|C|1798
6OLG|1|A2|U|1799
6OLG|1|A2|G|1800
6OLG|1|A2|G|1801
6OLG|1|A2|C|1802
6OLG|1|A2|G|1803
6OLG|1|A2|U|1804
6OLG|1|A2|G|1805

Current chains

Chain A2

28S ribosomal RNA

Nearby chains

Chain AD

60S ribosomal protein L5

Chain AT

60S ribosomal protein L21

Chain Ab

60S ribosomal protein L29