HL_6OLG_054

3D structure

PDB id

6OLG (explore in PDB, NAKB, or RNA 3D Hub)

Description

Human ribosome nascent chain complex stalled by a drug-like small molecule (CDH1_RNC with PP tRNA)

Experimental method

ELECTRON MICROSCOPY

Resolution

3.4 Å

Loop

Sequence

UCUAAUUAG

Length

9 nucleotides

Bulged bases

6OLG|1|A2|U|3773

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_6OLG_054 not in the Motif Atlas

Homologous match to HL_8C3A_050

Geometric discrepancy: 0.1263

The information below is about HL_8C3A_050

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_27115.2

Basepair signature

cWW-F-F-F-F-F-F

Number of instances in this motif group

22

Unit IDs

6OLG|1|A2|U|3767
6OLG|1|A2|C|3768
6OLG|1|A2|U|3769
6OLG|1|A2|A|3770
6OLG|1|A2|A|3771
6OLG|1|A2|U|3772
6OLG|1|A2|U|3773
6OLG|1|A2|A|3774
6OLG|1|A2|G|3775

Current chains

Chain A2

28S ribosomal RNA

Nearby chains

Chain AV

60S ribosomal protein L23

Chain B1

Small subunit ribosomal RNA; SSU rRNA