HL_6OLG_059

3D structure

PDB id

6OLG (explore in PDB, NAKB, or RNA 3D Hub)

Description

Human ribosome nascent chain complex stalled by a drug-like small molecule (CDH1_RNC with PP tRNA)

Experimental method

ELECTRON MICROSCOPY

Resolution

3.4 Å

Loop

Sequence

UCAAACGGUAACG

Length

13 nucleotides

Bulged bases

6OLG|1|A2|A|4176, 6OLG|1|A2|C|4183

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_6OLG_059 not in the Motif Atlas

Homologous match to HL_8C3A_056

Geometric discrepancy: 0.1566

The information below is about HL_8C3A_056

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_19870.9

Basepair signature

cWW-tHH-cWW-tHS-F-F-tWW

Number of instances in this motif group

8

Unit IDs

6OLG|1|A2|U|4172
6OLG|1|A2|C|4173
6OLG|1|A2|A|4174
6OLG|1|A2|A|4175
6OLG|1|A2|A|4176
6OLG|1|A2|C|4177
6OLG|1|A2|G|4178
6OLG|1|A2|G|4179
6OLG|1|A2|U|4180
6OLG|1|A2|A|4181
6OLG|1|A2|A|4182
6OLG|1|A2|C|4183
6OLG|1|A2|G|4184

Current chains

Chain A2

28S ribosomal RNA

Nearby chains

Chain AI

60S ribosomal protein L10

Chain AT

60S ribosomal protein L21

Chain Ab

60S ribosomal protein L29