HL_6OLG_108

3D structure

PDB id

6OLG (explore in PDB, NAKB, or RNA 3D Hub)

Description

Human ribosome nascent chain complex stalled by a drug-like small molecule (CDH1_RNC with PP tRNA)

Experimental method

ELECTRON MICROSCOPY

Resolution

3.4 Å

Loop

Sequence

AUUGAUAGCU

Length

10 nucleotides

Bulged bases

6OLG|1|B1|U|1300, 6OLG|1|B1|G|1302

QA status

Unknown status

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_6OLG_108 not in the Motif Atlas

Homologous match to HL_4V88_213

Geometric discrepancy: 0.2249

The information below is about HL_4V88_213

Detailed Annotation

Anticodon loop related

Broad Annotation

Anticodon loop related

Motif group

HL_27115.2

Basepair signature

cWW-F-F-F-F-F-F

Number of instances in this motif group

22

Unit IDs

6OLG|1|B1|A|1295
6OLG|1|B1|U|1296
6OLG|1|B1|U|1297
6OLG|1|B1|G|1298
6OLG|1|B1|A|1299
6OLG|1|B1|U|1300
6OLG|1|B1|A|1301
6OLG|1|B1|G|1302
6OLG|1|B1|C|1303
6OLG|1|B1|U|1304

Current chains

Chain B1

18S ribosomal RNA

Nearby chains

Chain BP

40S ribosomal protein S15

Chain Bd

40S ribosomal protein S29

Chain Bf

40S ribosomal protein S27a