HL_6OLI_010

3D structure

PDB id

6OLI (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of human ribosome nascent chain complex selectively stalled by a drug-like small molecule (USO1-RNC)

Experimental method

ELECTRON MICROSCOPY

Resolution

3.5 Å

Loop

Sequence

CUGACCCCCUUCGCGGGGGGGAUG

Length

24 nucleotides

Bulged bases

6OLI|1|S2|C|195, 6OLI|1|S2|U|198

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_6OLI_010 not in the Motif Atlas

Geometric match to HL_2Y9H_005

Geometric discrepancy: 0.3843

The information below is about HL_2Y9H_005

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_44506.2

Basepair signature

cWW-F-F-F

Number of instances in this motif group

4

Unit IDs

6OLI|1|S2|C|188
6OLI|1|S2|U|189
6OLI|1|S2|G|190
6OLI|1|S2|A|191
6OLI|1|S2|C|192
6OLI|1|S2|C|193
6OLI|1|S2|C|194
6OLI|1|S2|C|195
6OLI|1|S2|C|196
6OLI|1|S2|U|197
6OLI|1|S2|U|198
6OLI|1|S2|C|199
6OLI|1|S2|G|200
6OLI|1|S2|C|201
6OLI|1|S2|G|202
6OLI|1|S2|G|203
6OLI|1|S2|G|204
6OLI|1|S2|G|205
6OLI|1|S2|G|206
6OLI|1|S2|G|207
6OLI|1|S2|G|208
6OLI|1|S2|A|209
6OLI|1|S2|U|210
6OLI|1|S2|G|211

Current chains

Chain S2

18S ribosomal RNA

Nearby chains

Chain SI

40S ribosomal protein S8