HL_6OLI_065

3D structure

PDB id

6OLI (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of human ribosome nascent chain complex selectively stalled by a drug-like small molecule (USO1-RNC)

Experimental method

ELECTRON MICROSCOPY

Resolution

3.5 Å

Loop

Sequence

ACGUGCAAAU

Length

10 nucleotides

Bulged bases

6OLI|1|t|U|1578, 6OLI|1|t|A|1582

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_6OLI_065 not in the Motif Atlas

Homologous match to HL_5TBW_020

Geometric discrepancy: 0.0983

The information below is about HL_5TBW_020

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_39334.8

Basepair signature

cWW-cWS-tSW-F-F

Number of instances in this motif group

7

Unit IDs

6OLI|1|t|A|1575
6OLI|1|t|C|1576
6OLI|1|t|G|1577
6OLI|1|t|U|1578
6OLI|1|t|G|1579
6OLI|1|t|C|1580
6OLI|1|t|A|1581
6OLI|1|t|A|1582
6OLI|1|t|A|1583
6OLI|1|t|U|1584

Current chains

Chain t

28S ribosomal RNA

Nearby chains

Chain B

60S ribosomal protein L3

Chain Q

60S ribosomal protein L17

Chain k

60S ribosomal protein L37

Chain y

Nascent chain