HL_6OLI_092

3D structure

PDB id

6OLI (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of human ribosome nascent chain complex selectively stalled by a drug-like small molecule (USO1-RNC)

Experimental method

ELECTRON MICROSCOPY

Resolution

3.5 Å

Loop

Sequence

UUUAAUUAAAA

Length

11 nucleotides

Bulged bases

6OLI|1|t|A|3613, 6OLI|1|t|A|3614, 6OLI|1|t|U|3615, 6OLI|1|t|A|3619

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_6OLI_092 not in the Motif Atlas

Homologous match to HL_8C3A_046

Geometric discrepancy: 0.1928

The information below is about HL_8C3A_046

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_43613.6

Basepair signature

cWW-tWH-tWH-F

Number of instances in this motif group

6

Unit IDs

6OLI|1|t|U|3610
6OLI|1|t|U|3611
6OLI|1|t|U|3612
6OLI|1|t|A|3613
6OLI|1|t|A|3614
6OLI|1|t|U|3615
6OLI|1|t|U|3616
6OLI|1|t|A|3617
6OLI|1|t|A|3618
6OLI|1|t|A|3619
6OLI|1|t|A|3620

Current chains

Chain t

28S ribosomal RNA

Nearby chains

Chain A

60S ribosomal protein L8

Chain k

60S ribosomal protein L37

Chain y

Nascent chain