HL_6OLI_096

3D structure

PDB id

6OLI (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of human ribosome nascent chain complex selectively stalled by a drug-like small molecule (USO1-RNC)

Experimental method

ELECTRON MICROSCOPY

Resolution

3.5 Å

Loop

Sequence

UCUAAUUAG

Length

9 nucleotides

Bulged bases

6OLI|1|t|U|3773

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_6OLI_096 not in the Motif Atlas

Homologous match to HL_8C3A_050

Geometric discrepancy: 0.1073

The information below is about HL_8C3A_050

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_27115.2

Basepair signature

cWW-F-F-F-F-F-F

Number of instances in this motif group

22

Unit IDs

6OLI|1|t|U|3767
6OLI|1|t|C|3768
6OLI|1|t|U|3769
6OLI|1|t|A|3770
6OLI|1|t|A|3771
6OLI|1|t|U|3772
6OLI|1|t|U|3773
6OLI|1|t|A|3774
6OLI|1|t|G|3775

Current chains

Chain t

28S ribosomal RNA

Nearby chains

Chain S2

Small subunit ribosomal RNA; SSU rRNA

Chain W

60S ribosomal protein L23