HL_6OM7_004

3D structure

PDB id

6OM7 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Human ribosome nascent chain complex (PCSK9-RNC) stalled by a drug-like small molecule with AA and PE tRNAs

Experimental method

ELECTRON MICROSCOPY

Resolution

3.7 Å

Loop

Sequence

GGGUUCCUCCC

Length

11 nucleotides

Bulged bases

6OM7|1|D|U|124, 6OM7|1|D|C|128

QA status

Unknown status

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_6OM7_004 not in the Motif Atlas

Geometric match to HL_5TBW_006

Geometric discrepancy: 0.2078

The information below is about HL_5TBW_006

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_71121.1

Basepair signature

cWW-F

Number of instances in this motif group

24

Unit IDs

6OM7|1|D|G|120
6OM7|1|D|G|121
6OM7|1|D|G|122
6OM7|1|D|U|123
6OM7|1|D|U|124
6OM7|1|D|C|125
6OM7|1|D|C|126
6OM7|1|D|U|127
6OM7|1|D|C|128
6OM7|1|D|C|129
6OM7|1|D|C|130

Current chains

Chain D

5.8S ribosomal RNA

Nearby chains

Chain Y

60S ribosomal protein L23a

Chain t

Large subunit ribosomal RNA; LSU rRNA