3D structure

PDB id
6OPE (explore in PDB, NAKB, or RNA 3D Hub)
Description
Crystal structure of tRNA^ Ala(GGC) U32-A38 bound to near-cognate 70S A site
Experimental method
X-RAY DIFFRACTION
Resolution
3.1 Å

Loop

Sequence
GGAUGCAAAC
Length
10 nucleotides
Bulged bases
6OPE|1|RA|U|747, 6OPE|1|RA|A|751, 6OPE|1|RA|A|752
QA status
Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.
R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
R3DMCS Rfam
HL_6OPE_061 not in the Motif Atlas
Homologous match to HL_7RQB_023
Geometric discrepancy: 0.0978
The information below is about HL_7RQB_023
Detailed Annotation
No text annotation
Broad Annotation
No text annotation
Motif group
HL_39334.6
Basepair signature
cWW-cWS-tSW-F-F
Number of instances in this motif group
6

Unit IDs

6OPE|1|RA|G|744
6OPE|1|RA|G|745
6OPE|1|RA|A|746
6OPE|1|RA|U|747
6OPE|1|RA|G|748
6OPE|1|RA|C|749
6OPE|1|RA|A|750
6OPE|1|RA|A|751
6OPE|1|RA|A|752
6OPE|1|RA|C|753

Current chains

Chain RA
23S rRNA

Nearby chains

Chain R5
50S ribosomal protein L32
Chain R7
50S ribosomal protein L34
Chain RE
50S ribosomal protein L3
Chain RW
50S ribosomal protein L22

Coloring options:


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