HL_6OPE_099

3D structure

PDB id

6OPE (explore in PDB, NAKB, or RNA 3D Hub)

Description

Crystal structure of tRNA^ Ala(GGC) U32-A38 bound to near-cognate 70S A site

Experimental method

X-RAY DIFFRACTION

Resolution

3.1 Å

Loop

Sequence

CGUCCACAG

Length

9 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_6OPE_099 not in the Motif Atlas

Homologous match to HL_7A0S_059

Geometric discrepancy: 0.1746

The information below is about HL_7A0S_059

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_32735.2

Basepair signature

cWW-tSH-F-F-F-F-F

Number of instances in this motif group

7

Unit IDs

6OPE|1|RA|C|2471
6OPE|1|RA|G|2472
6OPE|1|RA|U|2473
6OPE|1|RA|C|2474
6OPE|1|RA|C|2475
6OPE|1|RA|A|2476
6OPE|1|RA|C|2477
6OPE|1|RA|A|2478
6OPE|1|RA|G|2479

Current chains

Chain RA

23S rRNA

Nearby chains

Chain QY

Transfer RNA; tRNA

Chain R9

50S ribosomal protein L36

Chain RQ

50S ribosomal protein L16