3D structure

PDB id
6ORD (explore in PDB, NAKB, or RNA 3D Hub)
Description
Crystal structure of tRNA^ Ala(GGC) U32-A38 bound to cognate 70S A site
Experimental method
X-RAY DIFFRACTION
Resolution
3.1 Å

Loop

Sequence
UAUUGAAGCA
Length
10 nucleotides
Bulged bases
6ORD|1|RA|C|574
QA status
Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.
R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
R3DMCS Rfam
HL_6ORD_055 not in the Motif Atlas
Homologous match to HL_7RQB_018
Geometric discrepancy: 0.067
The information below is about HL_7RQB_018
Detailed Annotation
No text annotation
Broad Annotation
No text annotation
Motif group
HL_41998.1
Basepair signature
cWW-tWH-F-F-F
Number of instances in this motif group
69

Unit IDs

6ORD|1|RA|U|566
6ORD|1|RA|A|567
6ORD|1|RA|U|568
6ORD|1|RA|U|569
6ORD|1|RA|G|570
6ORD|1|RA|A|571
6ORD|1|RA|A|572
6ORD|1|RA|G|573
6ORD|1|RA|C|574
6ORD|1|RA|A|575

Current chains

Chain RA
23S rRNA

Nearby chains

Chain R5
50S ribosomal protein L32
Chain RE
50S ribosomal protein L3
Chain RP
50S ribosomal protein L15
Chain RV
50S ribosomal protein L21

Coloring options:


Copyright 2025 BGSU RNA group. Page generated in 0.1598 s